1P13 Transferase date Apr 11, 2003
title Crystal Structure Of The Src Sh2 Domain Complexed With Pepti (Sdpyanfk)
authors E.D.Sonnenburg, A.Bilwes, T.Hunter, J.P.Noel
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Src
Chain: A, B
Fragment: Sh2 Domain
Synonym: P60-Src, C-Src
Ec: 2.7.1.112
Engineered: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Src
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis8

Molecule: Peptide
Chain: C, D
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized.
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.384 58.793 62.662 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.63 Å
ligand CAC, PTR BindingDB enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1O4L, 1O4N
Primary referenceThe structure of the membrane distal phosphatase domain of RPTPalpha reveals interdomain flexibility and an SH2 domain interaction region., Sonnenburg ED, Bilwes A, Hunter T, Noel JP, Biochemistry 2003 Jul 8;42(26):7904-14. PMID:12834342
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1p13.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (1p13.pdb2.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 1P13
  • CSU: Contacts of Structural Units for 1P13
  • Likely Quarternary Molecular Structure file(s) for 1P13
  • Retrieve 1P13 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P13 from S2C, [Save to disk]
  • View 1P13 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P13
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P13, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p13a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1p13b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p13_D] [1p13_B] [1p13_A] [1p13_C] [1p13]
  • SWISS-PROT database: [P00523]
  • Domain organization of [SRC_CHICK] by SWISSPFAM
  • Domain found in 1P13: [SH2 ] by SMART
  • Other resources with information on 1P13
  • Community annotation for 1P13 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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