1P1H Isomerase date Apr 12, 2003
title Crystal Structure Of The 1l-Myo-Inositolnad+ Complex
authors X.Jin, J.H.Geiger
compound source
Molecule: Inositol-3-Phosphate Synthase
Chain: A, B, C, D
Synonym: 1l-Myo-Inositol 1-Phosphate Synthase, Myo-Inositol Phosphate Synthase, Mi-1-P Synthase, Ips;
Ec: 5.5.1.4
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.794 185.581 94.078 90.00 114.77 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand NAD enzyme Isomerase E.C.5.5.1.4 BRENDA
related structures by homologous chain: 1P1J, 1RM0
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructures of NAD(+)- and NADH-bound 1-l-myo-inositol 1-phosphate synthase., Jin X, Geiger JH, Acta Crystallogr D Biol Crystallogr 2003 Jul;59(Pt 7):1154-64. PMID:12832758
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (353 Kb) [Save to disk]
  • Biological Unit Coordinates (1p1h.pdb1.gz) 346 Kb
  • LPC: Ligand-Protein Contacts for 1P1H
  • CSU: Contacts of Structural Units for 1P1H
  • Likely Quarternary Molecular Structure file(s) for 1P1H
  • Structure Factors (3055 Kb)
  • Retrieve 1P1H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P1H from S2C, [Save to disk]
  • Re-refined 1p1h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1P1H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P1H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P1H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p1ha1, region A:10-322,A:438-533 [Jmol] [rasmolscript] [script source]
        - Domain d1p1ha2, region A:323-437 [Jmol] [rasmolscript] [script source]
        - Domain d1p1hb1, region B:10-322,B:438-533 [Jmol] [rasmolscript] [script source]
        - Domain d1p1hb2, region B:323-437 [Jmol] [rasmolscript] [script source]
        - Domain d1p1hc1, region C:10-322,C:438-533 [Jmol] [rasmolscript] [script source]
        - Domain d1p1hc2, region C:323-437 [Jmol] [rasmolscript] [script source]
        - Domain d1p1hd1, region D:10-322,D:438-533 [Jmol] [rasmolscript] [script source]
        - Domain d1p1hd2, region D:323-437 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p1h_B] [1p1h_A] [1p1h_C] [1p1h] [1p1h_D]
  • SWISS-PROT database: [P11986]
  • Domain organization of [INO1_YEAST] by SWISSPFAM
  • Other resources with information on 1P1H
  • Community annotation for 1P1H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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