1P4J Transferase date Apr 23, 2003
title Crystal Structure Of Glycogen Phosphorylase B In Complex Wit Hydroxy-Beta-D-Glucopyranosyl)Formamide
authors E.D.Chrysina, N.G.Oikonomakos, S.E.Zographos, M.N.Kosmopoulou, N.Bischler, D.D.Leonidas, V.Nagy, L.Somsak, P.Gergely, J.P.Pral
compound source
Molecule: Glycogen Phosphorylase, Muscle Form
Chain: A
Synonym: Glycogen Phosphorylase B
Ec: 2.4.1.1
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
symmetry Space Group: P 43 21 2
R_factor 0.181 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.160 128.160 116.010 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CBF, PLP enzyme Transferase E.C.2.4.1.1 BRENDA
related structures by homologous chain: 1B4D, 1LWN
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (1p4j.pdb1.gz) 273 Kb
  • LPC: Ligand-Protein Contacts for 1P4J
  • CSU: Contacts of Structural Units for 1P4J
  • Likely Quarternary Molecular Structure file(s) for 1P4J
  • Retrieve 1P4J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P4J from S2C, [Save to disk]
  • View 1P4J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P4J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P4J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p4ja_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p4j_A] [1p4j]
  • SWISS-PROT database: [P00489]
  • Domain organization of [PYGM_RABIT] by SWISSPFAM
  • Other resources with information on 1P4J
  • Community annotation for 1P4J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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