1P5F	Unknown Function	date	Apr 26, 2003
title	Crystal Structure Of Human Dj-1
authors	M.A.Wilson, J.L.Collins, Y.Hod, D.Ringe, G.A.Petsko
compound		source
Molecule: Rna-Binding Protein Regulatory Subunit Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-15b
symmetry	Space Group: P 31 2 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.306 75.306 75.422 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.10 Å
related structures	by homologous chain: 1SOA
Gene Ontology	Chain Function Process Component A transcription coactivator ac... peroxiredoxin activity glyoxalase (glycolic acid-fo... synaptic transmission, dopam... negative regulation of prote... positive regulation of pepti... dopamine uptake involved in ... positive regulation of L-dop...
Primary reference	The 1.1-A resolution crystal structure of DJ-1, the protein mutated in autosomal recessive early onset Parkinson's disease., Wilson MA, Collins JL, Hod Y, Ringe D, Petsko GA, Proc Natl Acad Sci U S A 2003 Aug 5;100(16):9256-61. Epub 2003 Jul 10. PMID:12855764

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (1p5f.pdb1.gz) 140 Kb Biological Unit Coordinates (1p5f.pdb2.gz) 70 Kb CSU: Contacts of Structural Units for 1P5F Likely Quarternary Molecular Structure file(s) for 1P5F Structure Factors (825 Kb) Retrieve 1P5F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1P5F from S2C, [Save to disk] Re-refined 1p5f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1P5F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1P5F

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1P5F from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1P5F, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1p5fa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1p5f_A] [1p5f] SWISS-PROT database: [Q99497] Domain organization of [PARK7_HUMAN] by SWISSPFAM

Other resources with information on 1P5F

Community annotation for 1P5F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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