1P5Q	Isomerase	date	Apr 28, 2003
title	Crystal Structure Of Fkbp52 C-Terminal Domain
authors	B.Wu, P.Li, Z.Lou, C.Shu, Y.Ding, B.Shen, Z.Rao
compound		source
Molecule: Fk506-Binding Protein 4 Chain: A, B, C Fragment: Fkbp52 C-Terminal Domain Synonym: Fkbp52 Ec: 5.2.1.8 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: C 2 2 21	R_factor 0.212 R_Free 0.284
crystal cell	length a length b length c angle alpha angle beta angle gamma 114.274 142.927 170.897 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	MSE, SO4	enzyme	Isomerase E.C.5.2.1.8 BRENDA
related structures	by homologous chain: 1Q1C, 1QZ2
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	3D structure of human FK506-binding protein 52: implications for the assembly of the glucocorticoid receptor/Hsp90/immunophilin heterocomplex., Wu B, Li P, Liu Y, Lou Z, Ding Y, Shu C, Ye S, Bartlam M, Shen B, Rao Z, Proc Natl Acad Sci U S A 2004 Jun 1;101(22):8348-53. Epub 2004 May 24. PMID:15159550

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk] Biological Unit Coordinates (1p5q.pdb1.gz) 301 Kb LPC: Ligand-Protein Contacts for 1P5Q CSU: Contacts of Structural Units for 1P5Q Likely Quarternary Molecular Structure file(s) for 1P5Q Structure Factors (911 Kb) Retrieve 1P5Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1P5Q from S2C, [Save to disk] Re-refined 1p5q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1P5Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1P5Q

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1P5Q, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1p5qa2, region A:145-257 [Jmol] [rasmolscript] [script source]     - Domain d1p5qa1, region A:258-427 [Jmol] [rasmolscript] [script source]     - Domain d1p5qb2, region B:145-257 [Jmol] [rasmolscript] [script source]     - Domain d1p5qb1, region B:258-427 [Jmol] [rasmolscript] [script source]     - Domain d1p5qc2, region C:145-257 [Jmol] [rasmolscript] [script source]     - Domain d1p5qc1, region C:258-427 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1p5q_C] [1p5q] [1p5q_B] [1p5q_A] SWISS-PROT database: [Q02790] Domain organization of [FKBP4_HUMAN] by SWISSPFAM Domain found in 1P5Q: [TPR ] by SMART

Other resources with information on 1P5Q

Community annotation for 1P5Q at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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