1P5Z	Transferase	date	Apr 28, 2003
title	Structure Of Human Dck Complexed With Cytarabine And Adp-Mg
authors	E.Sabini, S.Ort, C.Monnerjahn, M.Konrad, A.Lavie
compound		source
Molecule: Deoxycytidine Kinase Chain: B Synonym: Dck Ec: 2.7.1.74 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dck Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet14b
symmetry	Space Group: P 43 21 2	R_factor 0.173 R_Free 0.197
crystal cell	length a length b length c angle alpha angle beta angle gamma 80.720 80.720 94.280 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	ADP, AR3, MG	enzyme	Transferase E.C.2.7.1.74 BRENDA
note	1P5Z is a representative structure
related structures	by homologous chain: 1P62
Gene Ontology	Chain Function Process Component B deoxyadenosine kinase activi... deoxycytidine kinase activit... deoxyguanosine kinase activi... deoxynucleoside kinase activ...
Primary reference	Structure of human dCK suggests strategies to improve anticancer and antiviral therapy., Sabini E, Ort S, Monnerjahn C, Konrad M, Lavie A, Nat Struct Biol 2003 Jul;10(7):513-9. PMID:12808445

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (1p5z.pdb1.gz) 83 Kb LPC: Ligand-Protein Contacts for 1P5Z CSU: Contacts of Structural Units for 1P5Z Likely Quarternary Molecular Structure file(s) for 1P5Z Structure Factors (528 Kb) Retrieve 1P5Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1P5Z from S2C, [Save to disk] Re-refined 1p5z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1P5Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1P5Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1P5Z, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1p5zb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1p5z] [1p5z_B] SWISS-PROT database: [P27707] Domain organization of [DCK_HUMAN] by SWISSPFAM

Other resources with information on 1P5Z

Community annotation for 1P5Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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