1P6V	Rna Binding Protein Rna	date	Apr 30, 2003
title	Crystal Structure Of The Trna Domain Of Transfer-Messenger R Complex With Smpb
authors	S.Gutmann, P.W.Haebel, L.Metzinger, M.Sutter, B.Felden, N.Ban
compound		source
Molecule: 45-Mer Chain: B, D Engineered: Yes		Synthetic: Yes Other_details: In Vitro Transcription Of Aquifex Aeolicus Tmrna[Delta];
Molecule: Ssra-Binding Protein Chain: A, C Engineered: Yes		Organism_scientific: Aquifex Aeolicus Organism_taxid: 63363 Gene: Smpb Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 43 21 2	R_factor 0.302 R_Free 0.360
crystal cell	length a length b length c angle alpha angle beta angle gamma 99.680 99.680 207.050 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.20 Å
Gene Ontology	Chain Function Process Component A, C
Primary reference	Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB., Gutmann S, Haebel PW, Metzinger L, Sutter M, Felden B, Ban N, Nature 2003 Aug 7;424(6949):699-703. PMID:12904796

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk] Biological Unit Coordinates (1p6v.pdb1.gz) 36 Kb Biological Unit Coordinates (1p6v.pdb2.gz) 29 Kb CSU: Contacts of Structural Units for 1P6V Likely Quarternary Molecular Structure file(s) for 1P6V Structure Factors (149 Kb) Retrieve 1P6V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1P6V from S2C, [Save to disk] Re-refined 1p6v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1P6V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1P6V

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1P6V, from MSDmotif at EBI Structure summary from SCOR (Structural Classification of RNA) Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1p6va_, region A [Jmol] [rasmolscript] [script source]     - Domain d1p6vc_, region C [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1p6v_C] [1p6v_D] [1p6v] [1p6v_B] [1p6v_A] SWISS-PROT database: [O66640] Domain organization of [SSRP_AQUAE] by SWISSPFAM

Other resources with information on 1P6V

Community annotation for 1P6V at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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