1P7G Oxidoreductase date May 01, 2003
title Crystal Structure Of Superoxide Dismutase From Pyrobaculum A
authors S.Lee, M.R.Sawaya, D.Eisenberg
compound source
Molecule: Superoxide Dismutase
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X;
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Pyrobaculum Aerophilum
Organism_taxid: 13773
Gene: Sod Or Pae0274
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-30
symmetry Space Group: P 32
R_factor 0.162 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
163.429 163.429 172.169 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACT, BME, MSE enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U
  • superoxide dismutase activit...


  • Primary referenceStructure of superoxide dismutase from Pyrobaculum aerophilum presents a challenging case in molecular replacement with multiple molecules, pseudo-symmetry and twinning., Lee S, Sawaya MR, Eisenberg D, Acta Crystallogr D Biol Crystallogr 2003 Dec;59(Pt 12):2191-9. PMID:14646077
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (868 Kb) [Save to disk]
  • Biological Unit Coordinates (1p7g.pdb1.gz) 150 Kb
  • Biological Unit Coordinates (1p7g.pdb2.gz) 149 Kb
  • Biological Unit Coordinates (1p7g.pdb3.gz) 149 Kb
  • Biological Unit Coordinates (1p7g.pdb4.gz) 150 Kb
  • Biological Unit Coordinates (1p7g.pdb5.gz) 150 Kb
  • Biological Unit Coordinates (1p7g.pdb6.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 1P7G
  • CSU: Contacts of Structural Units for 1P7G
  • Likely Quarternary Molecular Structure file(s) for 1P7G
  • Structure Factors (4060 Kb)
  • Retrieve 1P7G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P7G from S2C, [Save to disk]
  • Re-refined 1p7g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1P7G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P7G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P7G, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p7ga2, region A:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7ga1, region A:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gb2, region B:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gb1, region B:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gc2, region C:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gc1, region C:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gd2, region D:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gd1, region D:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7ge2, region E:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7ge1, region E:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gf2, region F:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gf1, region F:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gg2, region G:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gg1, region G:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gh2, region H:104-221 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gh1, region H:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gi2, region I:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gi1, region I:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gj2, region J:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gj1, region J:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gk2, region K:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gk1, region K:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gl2, region L:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gl1, region L:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gm2, region M:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gm1, region M:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gn2, region N:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gn1, region N:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7go2, region O:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7go1, region O:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gp2, region P:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gp1, region P:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gq2, region Q:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gq1, region Q:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gr2, region R:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gr1, region R:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gs2, region S:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gs1, region S:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gt2, region T:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gt1, region T:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gu2, region U:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gu1, region U:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gv2, region V:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gv1, region V:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gw2, region W:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gw1, region W:12-103 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gx2, region X:104-222 [Jmol] [rasmolscript] [script source]
        - Domain d1p7gx1, region X:12-103 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p7g_R] [1p7g_T] [1p7g_U] [1p7g_V] [1p7g_P] [1p7g_D] [1p7g_X] [1p7g_K] [1p7g_C] [1p7g_M] [1p7g_F] [1p7g_J] [1p7g_O] [1p7g_E] [1p7g_L] [1p7g_B] [1p7g_A] [1p7g_G] [1p7g_S] [1p7g] [1p7g_I] [1p7g_N] [1p7g_H] [1p7g_Q] [1p7g_W]
  • SWISS-PROT database: [O93724]
  • Domain organization of [SODF_PYRAE] by SWISSPFAM
  • Other resources with information on 1P7G
  • Community annotation for 1P7G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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