1P7H	Transcription Dna	date	May 01, 2003
title	Structure Of Nfat1 Bound As A Dimer To The Hiv-1 Ltr Kb Elem
authors	M.J.Giffin, J.C.Stroud, D.L.Bates, K.D.Von Koenig, J.Hardin, L.Ch
compound		source
Molecule: 5'-D(Apaptpgpgpgpgpapcptptptpcpcpa Chain: A, C Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Tptptpgpgpapapapgptpcpcpcpcpa Chain: B, D Engineered: Yes		Synthetic: Yes
Molecule: Nuclear Factor Of Activated T-Cells, Cytoplasmic Chain: L, M, N, O Fragment: Nfat1 Synonym: T Cell Transcription Factor Nfat1, Nfat Pre-Existi Subunit, Nf-Atp; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nfatc2 Or Nfat1 Or Nfatp
symmetry	Space Group: P 1	R_factor 0.231 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.107 80.321 80.308 71.20 78.97 78.94
method	X-Ray Diffraction	resolution	2.60 Å
related structures	by homologous chain: 1A02
Gene Ontology	Chain Function Process Component O, M, N, L
Primary reference	Structure of NFAT1 bound as a dimer to the HIV-1 LTR kappa B element., Giffin MJ, Stroud JC, Bates DL, von Koenig KD, Hardin J, Chen L, Nat Struct Biol 2003 Oct;10(10):800-6. Epub 2003 Aug 31. PMID:12949493

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk] Biological Unit Coordinates (1p7h.pdb1.gz) 105 Kb Biological Unit Coordinates (1p7h.pdb2.gz) 105 Kb CSU: Contacts of Structural Units for 1P7H Likely Quarternary Molecular Structure file(s) for 1P7H Structure Factors (744 Kb) Retrieve 1P7H in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1P7H from S2C, [Save to disk] Re-refined 1p7h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1P7H in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1P7H

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1P7H, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1p7hl2, region L:393-575 [Jmol] [rasmolscript] [script source]     - Domain d1p7hl1, region L:576-678 [Jmol] [rasmolscript] [script source]     - Domain d1p7hm2, region M:393-575 [Jmol] [rasmolscript] [script source]     - Domain d1p7hm1, region M:576-678 [Jmol] [rasmolscript] [script source]     - Domain d1p7hn2, region N:393-575 [Jmol] [rasmolscript] [script source]     - Domain d1p7hn1, region N:576-678 [Jmol] [rasmolscript] [script source]     - Domain d1p7ho2, region O:393-575 [Jmol] [rasmolscript] [script source]     - Domain d1p7ho1, region O:576-678 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1p7h_D] [1p7h_O] [1p7h_B] [1p7h_M] [1p7h_N] [1p7h_L] [1p7h_A] [1p7h] [1p7h_C] SWISS-PROT database: [Q13469] Domain organization of [NFAC2_HUMAN] by SWISSPFAM Domain found in 1P7H: [IPT ] by SMART

Other resources with information on 1P7H

Community annotation for 1P7H at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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