1P8T Signaling Protein date May 07, 2003
title Crystal Structure Of Nogo-66 Receptor
authors W.A.Barton, B.P.Liu, D.Tzvetkova, P.D.Jeffrey, A.E.Fournier, D.Sa S.M.Strittmatter, D.B.Nikolov
compound source
Molecule: Reticulon 4 Receptor
Chain: A
Synonym: Nogo Receptor, Ngr, Nogo-66 Receptor
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: 293 Cells
symmetry Space Group: P 31 2 1
R_factor 0.265 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.958 123.958 120.173 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand NAG, NDG enzyme
Primary referenceStructure and axon outgrowth inhibitor binding of the Nogo-66 receptor and related proteins., Barton WA, Liu BP, Tzvetkova D, Jeffrey PD, Fournier AE, Sah D, Cate R, Strittmatter SM, Nikolov DB, EMBO J 2003 Jul 1;22(13):3291-302. PMID:12839991
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1p8t.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1P8T
  • CSU: Contacts of Structural Units for 1P8T
  • Likely Quarternary Molecular Structure file(s) for 1P8T
  • Retrieve 1P8T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P8T from S2C, [Save to disk]
    • View 1P8T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1P8T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P8T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p8ta_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p8t_A] [1p8t]
  • SWISS-PROT database: [Q9BZR6]
  • Domain organization of [RTN4R_HUMAN] by SWISSPFAM
  • Domains found in 1P8T: [LRR] [LRRCT] [LRRNT] [LRR_TYP ] by SMART
    • Other resources with information on 1P8T
  • Community annotation for 1P8T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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