1P93	Hormone Receptor	date	May 09, 2003
title	Crystal Structure Of The Agonist Form Of Glucocorticoid Rece
authors	B.Kauppi, C.Jakob, M.Farnegardh, J.Yang, H.Ahola, M.Alarcon, K.Cal O.Engstrom, J.Harlan, S.Muchmore, A.K.Ramqvist, S.Thorell, L.Oh J.Greer, J.A.Gustafsson, J.Carlstedt-Duke, M.Carlquist
compound		source
Molecule: Glucocorticoid Receptor Chain: A, B, C, D Fragment: Residue 500-777, Hinge And Steroid Binding Domain Synonym: Gr Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr3c1 Or Grl Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Baculovirus
Molecule: Nuclear Receptor Coactivator 2 Chain: E, F, G, H Fragment: Tif Peptide 12mer Synonym: Ncoa-2, Transcriptional Intermediary Factor 2 Engineered: Yes		Synthetic: Yes Other_details: Synthetized Peptide
symmetry	Space Group: P 31	R_factor 0.345 R_Free 0.363
crystal cell	length a length b length c angle alpha angle beta angle gamma 127.400 127.400 91.800 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	DEX BindingDB	enzyme
Primary reference	The three-dimensional structures of antagonistic and agonistic forms of the glucocorticoid receptor ligand-binding domain: RU-486 induces a transconformation that leads to active antagonism., Kauppi B, Jakob C, Farnegardh M, Yang J, Ahola H, Alarcon M, Calles K, Engstrom O, Harlan J, Muchmore S, Ramqvist AK, Thorell S, Ohman L, Greer J, Gustafsson JA, Carlstedt-Duke J, Carlquist M, J Biol Chem 2003 Jun 20;278(25):22748-54. PMID:12686538

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk] Biological Unit Coordinates (1p93.pdb1.gz) 42 Kb Biological Unit Coordinates (1p93.pdb2.gz) 42 Kb Biological Unit Coordinates (1p93.pdb3.gz) 42 Kb Biological Unit Coordinates (1p93.pdb4.gz) 43 Kb LPC: Ligand-Protein Contacts for 1P93 CSU: Contacts of Structural Units for 1P93 Likely Quarternary Molecular Structure file(s) for 1P93 Structure Factors (595 Kb) Retrieve 1P93 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1P93 from S2C, [Save to disk] Re-refined 1p93 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1P93 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1P93

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1P93, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1p93a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1p93b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1p93c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1p93d_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1p93] [1p93_B] [1p93_E] [1p93_A] [1p93_D] [1p93_F] [1p93_H] [1p93_C] [1p93_G] SWISS-PROT database: [P04150] [Q15596] Domain organization of [GCR_HUMAN] [NCOA2_HUMAN] by SWISSPFAM Domain found in 1P93: [HOLI ] by SMART

Other resources with information on 1P93

Community annotation for 1P93 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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