1P9J Hormone Growth Factor date May 12, 2003
title Solution Structure And Dynamics Of The Egftgf-Alpha Chimera
authors M.Wingens, T.Walma, H.Van Ingen, C.Stortelers, J.E.Van Leeuwen, E Zoelen, G.W.Vuister
compound source
Molecule: Chimera Of Epidermal Growth Factor(Egf) And Trans Growth Factor Alpha (Tgf-Alpha);
Chain: A
Fragment: Tgf-Alpha (Residues 1-7), Egf (Residues 8-54)
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgf-Alpha And Egf
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X33
methodSolution NMR
related structures by homologous chain: 1GK5, 3EGF
Primary referenceStructural analysis of an epidermal growth factor/transforming growth factor-alpha chimera with unique ErbB binding specificity., Wingens M, Walma T, van Ingen H, Stortelers C, van Leeuwen JE, van Zoelen EJ, Vuister GW, J Biol Chem 2003 Oct 3;278(40):39114-23. Epub 2003 Jul 16. PMID:12869572
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (501 Kb) [Save to disk]
  • Biological Unit Coordinates (1p9j.pdb1.gz) 14 Kb
  • CSU: Contacts of Structural Units for 1P9J
  • Original NMR restraints for 1P9J from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1P9J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P9J from S2C, [Save to disk]
    • View 1P9J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1P9J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P9J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p9ja_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p9j_A] [1p9j]
  • SWISS-PROT database: [P01133]
  • Domain organization of [EGF_HUMAN] by SWISSPFAM
  • Domain found in 1P9J: [EGF ] by SMART
    • Other resources with information on 1P9J
  • Community annotation for 1P9J at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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