OCA Atlas for 1PA4

1PA4

Structural Genomics, Unknown Function

date

May 13, 2003

title

Solution Structure Of A Putative Ribosome-Binding Factor Fro Mycoplasma Pneumoniae (Mpn156)

authors

S.M.Rubin, J.G.Pelton, H.Yokota, R.Kim, D.E.Wemmer, Berkeley Stru Genomics Center (Bsgc)

compound

source

Molecule: Probable Ribosome-Binding Factor A
Chain: A
Engineered: Yes

Organism_scientific: Mycoplasma Pneumoniae
Organism_taxid: 2104
Gene: Mpn156
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pskb3

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Solution structure of a putative ribosome binding protein from Mycoplasma pneumoniae and comparison to a distant homolog., Rubin SM, Pelton JG, Yokota H, Kim R, Wemmer DE, J Struct Funct Genomics. 2003;4(4):235-43. PMID:15185964

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (424 Kb) [Save to disk]

Biological Unit Coordinates (1pa4.pdb1.gz) 27 Kb

CSU: Contacts of Structural Units for 1PA4

Original NMR restraints for 1PA4 from PDB

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1PA4 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1PA4 from S2C, [Save to disk]

View 1PA4 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PA4

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1PA4, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1pa4a_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pa4_A] [1pa4]

SWISS-PROT database: [P75589]

Domain organization of [RBFA_MYCPN] by SWISSPFAM

Other resources with information on 1PA4

Community annotation for 1PA4 at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]