1PC8	Hydrolase	date	May 16, 2003
title	Crystal Structure Of A Novel Form Of Mistletoe Lectin From H Viscum Album L. At 3.8a Resolution
authors	V.Mishra, A.S.Ethayathulla, M.Paramasivam, G.Singh, S.Yadav, P.Ka R.S.Sharma, C.R.Babu, T.P.Singh
compound		source
Molecule: Himalayan Mistletoe Ribosome-Inactivating Protein Chain: A Synonym: Mistletoe Lectin Ec: 3.2.2.22		Organism_scientific: Viscum Album Organism_common: European Mistletoe Organism_taxid: 3972 Strain: Himalayan V.Album
Molecule: Himalayan Mistletoe Ribosome-Inactivating Protein Chain: B Synonym: Mistletoe Lectin Ec: 3.2.2.22		Organism_scientific: Viscum Album Organism_common: European Mistletoe Organism_taxid: 3972 Strain: Himalayan V.Album
symmetry	Space Group: P 65 2 2	R_factor 0.228 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.182 109.182 309.440 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.80 Å
ligand	BMA, NAG	enzyme	Hydrolase E.C.3.2.2.22 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Structure of a novel ribosome-inactivating protein from a hemi-parasitic plant inhabiting the northwestern Himalayas., Mishra V, Ethayathulla AS, Sharma RS, Yadav S, Krauspenhaar R, Betzel C, Babu CR, Singh TP, Acta Crystallogr D Biol Crystallogr 2004 Dec;60(Pt 12 Pt 2):2295-304. Epub, . PMID:15583377

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk] Biological Unit Coordinates (1pc8.pdb1.gz) 80 Kb LPC: Ligand-Protein Contacts for 1PC8 CSU: Contacts of Structural Units for 1PC8 Likely Quarternary Molecular Structure file(s) for 1PC8 Structure Factors (105 Kb) Retrieve 1PC8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PC8 from S2C, [Save to disk] Re-refined 1pc8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1PC8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PC8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1PC8, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pc8a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1pc8b1, region B:1-133 [Jmol] [rasmolscript] [script source]     - Domain d1pc8b2, region B:134-255 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pc8_B] [1pc8_A] [1pc8] SWISS-PROT database: [Q6ITZ3] Domain organization of [ML4_VISAL] by SWISSPFAM Domain found in 1PC8: [RICIN ] by SMART

Other resources with information on 1PC8

Community annotation for 1PC8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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