1PDG Growth Factor date Jul 14, 1992
title Crystal Structure Of Human Platelet-Derived Growth Factor Bb
authors C.Oefner, A.D.Darcy, F.K.Winkler, B.Eggimann, M.Hosnag
compound source
Molecule: Platelet-Derived Growth Factor Bb
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
147.300 31.800 90.100 90.00 98.70 90.00
method X-Ray Diffractionresolution 3.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCrystal structure of human platelet-derived growth factor BB., Oefner C, D'Arcy A, Winkler FK, Eggimann B, Hosang M, EMBO J 1992 Nov;11(11):3921-6. PMID:1396586
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1pdg.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (1pdg.pdb2.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1PDG
  • Likely Quarternary Molecular Structure file(s) for 1PDG
  • Retrieve 1PDG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PDG from S2C, [Save to disk]
    • View 1PDG in 3D
  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 1PDG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PDG, from MSDmotif at EBI
  • Genome occurence of 1PDG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pdga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1pdgb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1pdgc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pdg] [1pdg_B] [1pdg_A] [1pdg_C]
  • SWISS-PROT database: [P01127]
  • Domain organization of [PDGFB_HUMAN] by SWISSPFAM
  • Domain found in 1PDG: [PDGF ] by SMART
    • Other resources with information on 1PDG
  • Community annotation for 1PDG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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