1PDH Oxidoreductase date Dec 01, 1994
title Crystal Structure Of P-Hydroxybenzoate Hydroxylase Reconstit The Modified Fad Present In Alcohol Oxidase From Methylotro Yeasts: Evidence For An Arabinoflavin
authors H.A.Schreuder, M.H.M.Eppink, W.J.H.Van Berkel
compound source
Molecule: P-Hydroxybenzoate Hydroxylase
Chain: A
Ec: 1.14.13.2
Engineered: Yes
Organism_scientific: Pseudomonas Fluorescens
Organism_taxid: 294
symmetry Space Group: C 2 2 21
R_factor 0.179 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.100 146.400 88.450 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand FAS, PHB enzyme Oxidoreductase E.C.1.14.13.2 BRENDA
related structures by homologous chain: 1BF3, 1PXC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of p-hydroxybenzoate hydroxylase reconstituted with the modified FAD present in alcohol oxidase from methylotrophic yeasts: evidence for an arabinoflavin., van Berkel WJ, Eppink MH, Schreuder HA, Protein Sci 1994 Dec;3(12):2245-53. PMID:7756982
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1pdh.pdb1.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 1PDH
  • CSU: Contacts of Structural Units for 1PDH
  • Likely Quarternary Molecular Structure file(s) for 1PDH
  • Structure Factors (308 Kb)
  • Retrieve 1PDH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PDH from S2C, [Save to disk]
  • Re-refined 1pdh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PDH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PDH, from MSDmotif at EBI
  • Genome occurence of 1PDH's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pdh_1, region 1-173,276-391 [Jmol] [rasmolscript] [script source]
        - Domain d1pdh_2, region 174-275 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pdh] [1pdh_A]
  • SWISS-PROT database: [P00438]
  • Domain organization of [PHHY_PSEFL] by SWISSPFAM
  • Other resources with information on 1PDH
  • Community annotation for 1PDH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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