1PDZ Lyase (Carbon-Oxygen) date Jun 05, 1995
title X-Ray Structure And Catalytic Mechanism Of Lobster Enolase
authors J.Janin, S.Duquerroy, C.Camus, G.Le Bras
compound source
Molecule: Enolase
Chain: A
Synonym: 2-Phospho-D-Glycerate Dehydratase
Ec: 4.2.1.11
Organism_scientific: Homarus Gammarus
Organism_common: European Lobster
Organism_taxid: 6707
Organ: Tail
Tissue: Tail Muscle
symmetry Space Group: P 31 2 1
R_factor 0.215 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.800 110.800 73.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand ACE, MN, PGA enzyme Lyase E.C.4.2.1.11 BRENDA
related structures by homologous chain: 3ENL, 7ENL
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray structure and catalytic mechanism of lobster enolase., Duquerroy S, Camus C, Janin J, Biochemistry 1995 Oct 3;34(39):12513-23. PMID:7547999
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (1pdz.pdb1.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 1PDZ
  • CSU: Contacts of Structural Units for 1PDZ
  • Likely Quarternary Molecular Structure file(s) for 1PDZ
  • Retrieve 1PDZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PDZ from S2C, [Save to disk]
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  • Visual 3D analysis of 1PDZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PDZ, from MSDmotif at EBI
  • Genome occurence of 1PDZ's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pdz_2, region 1-139 [Jmol] [rasmolscript] [script source]
        - Domain d1pdz_1, region 140-433 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pdz] [1pdz_A]
  • SWISS-PROT database: [P56252]
  • Domain organization of [ENO_HOMGA] by SWISSPFAM
  • Domains found in 1PDZ: [Enolase_C] [Enolase_N ] by SMART
  • Other resources with information on 1PDZ
  • Community annotation for 1PDZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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