1PEF Synthetic Protein date Jun 19, 1995
title Peptide F (Eqllkalefllkellekl), Amphiphilic Octadecapeptide
authors R.M.Garavito, K.Taylor, N.C.Yang
compound source
Molecule: Peptide F (Eqllkalefllkellekl)
Chain: A
Engineered: Yes
symmetry Space Group: P 1 21 1
R_factor 0.170 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
22.600 10.670 29.240 90.00 101.85 90.00
method X-Ray Diffractionresolution 1.50 Å
Primary referenceA novel, multilayer structure of a helical peptide., Taylor KS, Lou MZ, Chin TM, Yang NC, Garavito RM, Protein Sci 1996 Mar;5(3):414-21. PMID:8868477
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (6 Kb) [Save to disk]
  • Biological Unit Coordinates (1pef.pdb1.gz) 4 Kb
  • CSU: Contacts of Structural Units for 1PEF
  • Likely Quarternary Molecular Structure file(s) for 1PEF
  • Retrieve 1PEF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PEF from S2C, [Save to disk]
    • View 1PEF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PEF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1PEF from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PEF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pef__, region [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pef_A] [1pef]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1PEF
  • Community annotation for 1PEF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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