1PEG Transferase date May 21, 2003
title Structural Basis For The Product Specificity Of Histone Lysi Methyltransferases
authors X.Zhang, Z.Yang, S.I.Khan, J.R.Horton, H.Tamaru, E.U.Selker, X.Che
compound source
Molecule: Histone H3 Methyltransferase Dim-5
Chain: A, B
Fragment: Residues 17-318
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Neurospora Crassa
Organism_taxid: 5141
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codon Plus Ril (Stratag
Expression_system_vector_type: Pgex2t
Expression_system_plasmid: Pxc379

Molecule: Histone H3
Chain: P, Q
Fragment: Residues 1-15
Engineered: Yes

Synthetic: Yes
Other_details: The Histone H3 Peptide (N-Terminal Residues Synthesized.
symmetry Space Group: P 21 21 21
R_factor 0.220 R_Free 0.320
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.260 94.170 114.690 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.59 Å
ligand SAH, ZN enzyme Transferase E.C.2.1.1.43 BRENDA
related structures by homologous chain: 1ML9
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for the product specificity of histone lysine methyltransferases., Zhang X, Yang Z, Khan SI, Horton JR, Tamaru H, Selker EU, Cheng X, Mol Cell 2003 Jul;12(1):177-85. PMID:12887903
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (1peg.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (1peg.pdb2.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 1PEG
  • CSU: Contacts of Structural Units for 1PEG
  • Likely Quarternary Molecular Structure file(s) for 1PEG
  • Retrieve 1PEG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PEG from S2C, [Save to disk]
  • View 1PEG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PEG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PEG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pega_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1pegb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1peg_B] [1peg_A] [1peg_P] [1peg_Q] [1peg]
  • SWISS-PROT database: [Q8X225]
  • Domain organization of [DIM5_NEUCR] by SWISSPFAM
  • Domains found in 1PEG: [PostSET] [PreSET] [SET ] by SMART
  • Other resources with information on 1PEG
  • Community annotation for 1PEG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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