1PEV Structural Protein date May 22, 2003
title Crystal Structure Of The Actin Interacting Protein From Caen Elegans
authors S.Vorobiev, K.Mohri, A.A.Fedorov, S.Ono, S.C.Almo, S.K.Burley, New Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Actin Interacting Protein 1
Chain: A
Synonym: Aip1, Uncoordinated Protein 78
Engineered: Yes
 Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: Unc-78 Or C04f6.4
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Unc-78
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.660 90.817 76.983 90.00 94.06 90.00
method X-Ray Diffractionresolution 2.00 Å
related structures by homologous chain: 1NR0
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of functional residues on Caenorhabditis elegans actin-interacting protein 1 (UNC-78) for disassembly of actin depolymerizing factor/cofilin-bound actin filaments., Mohri K, Vorobiev S, Fedorov AA, Almo SC, Ono S, J Biol Chem 2004 Jul 23;279(30):31697-707. Epub 2004 May 18. PMID:15150269
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (1pev.pdb1.gz) 98 Kb
  • CSU: Contacts of Structural Units for 1PEV
  • Likely Quarternary Molecular Structure file(s) for 1PEV
  • Structure Factors (415 Kb)
  • Retrieve 1PEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PEV from S2C, [Save to disk]
  • Re-refined 1pev structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PEV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PEV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1peva1, region A:2-312 [Jmol] [rasmolscript] [script source]
        - Domain d1peva2, region A:313-611 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pev] [1pev_A]
  • SWISS-PROT database: [Q11176]
  • Domain organization of [WDR1_CAEEL] by SWISSPFAM
  • Domain found in 1PEV: [WD40 ] by SMART
    • Other resources with information on 1PEV
  • Community annotation for 1PEV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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