3PGK Transferase date Jul 15, 1982
title The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm Re
authors P.J.Shaw, N.P.Walker, H.C.Watson
compound source
Molecule: Phosphoglycerate Kinase
Chain: A
Ec: 2.7.2.3
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: C 1 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.600 54.400 93.000 90.00 134.40 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 3PG, ACE, ATP, MG BindingDB enzyme Transferase E.C.2.7.2.3 BRENDA
note 3PGK (Molecule of the Month:pdb50)supersedes 1PGK
related structures by homologous chain: 1KF0, 1QPG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSequence and structure of yeast phosphoglycerate kinase., Watson HC, Walker NP, Shaw PJ, Bryant TN, Wendell PL, Fothergill LA, Perkins RE, Conroy SC, Dobson MJ, Tuite MF, et al., EMBO J. 1982;1(12):1635-40. PMID:6765200
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3pgk.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 3PGK
  • CSU: Contacts of Structural Units for 3PGK
  • Likely Quarternary Molecular Structure file(s) for 3PGK
  • Retrieve 3PGK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PGK from S2C, [Save to disk]
  • View 3PGK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PGK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PGK, from MSDmotif at EBI
  • Genome occurence of 3PGK's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3pgk__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pgk_A] [3pgk]
  • SWISS-PROT database: [P00560]
  • Domain organization of [PGK_YEAST] by SWISSPFAM
  • Other resources with information on 3PGK
  • Community annotation for 3PGK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 3PGK from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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