1PGV	Protein Binding	date	May 28, 2003
title	Structural Genomics Of Caenorhabditis Elegans: Tropomodulin Domain
authors	J.Symersky, S.Lu, S.Li, L.Chen, E.Meehan, M.Luo, S.Qiu, R.J.Bunzel, A.Arabashi, L.A.Nagy, G.Lin, W.C.H.Luan, M.Carson, R.Gray, W.Hua Southeast Collaboratory For Structural Genomics (Secsg)
compound		source
Molecule: Tropomodulin Tmd-1 Chain: A Fragment: C-Terminal Domain Synonym: Tmd-1; Tropomodulin Protein 1, Isoform A Engineered: Yes		Organism_scientific: Caenorhabditis Elegans Organism_taxid: 6239 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b
symmetry	Space Group: P 21 21 21	R_factor 0.209 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 31.706 50.621 107.132 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Structural genomics of Caenorhabditis elegans: crystal structure of the tropomodulin C-terminal domain., Lu S, Symersky J, Li S, Carson M, Chen L, Meehan E, Luo M, Proteins 2004 Aug 1;56(2):384-6. PMID:15211521

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk] Biological Unit Coordinates (1pgv.pdb1.gz) 30 Kb CSU: Contacts of Structural Units for 1PGV Likely Quarternary Molecular Structure file(s) for 1PGV Structure Factors (125 Kb) Retrieve 1PGV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PGV from S2C, [Save to disk] Re-refined 1pgv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1PGV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PGV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1PGV, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pgva_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pgv_A] [1pgv] SWISS-PROT database: [O01479] Domain organization of [TMOD_CAEEL] by SWISSPFAM

Other resources with information on 1PGV

Community annotation for 1PGV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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