1PGY Protein Binding date May 28, 2003
title Solution Structure Of The Uba Domain In Saccharomyces Cerevi Protein, Swa2p
authors N.Chim, W.E.Gall, J.Xiao, M.P.Harris, T.R.Graham, A.M.Krezel
compound source
Molecule: Swa2p
Chain: A
Fragment: Ubiquitin-Associated (Uba) Domain
Synonym: Auxilin-Like Protein
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Swa2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32-Eklic
methodSolution NMR
note 1PGY is a representative structure
Primary referenceSolution structure of the ubiquitin-binding domain in Swa2p from Saccharomyces cerevisiae., Chim N, Gall WE, Xiao J, Harris MP, Graham TR, Krezel AM, Proteins 2004 Mar 1;54(4):784-93. PMID:14997574
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (1pgy.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1PGY
  • Retrieve 1PGY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PGY from S2C, [Save to disk]
  • View 1PGY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PGY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PGY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pgya_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pgy_A] [1pgy]
  • SWISS-PROT database: [Q06677]
  • Domain organization of [SWA2_YEAST] by SWISSPFAM
  • Other resources with information on 1PGY
  • Community annotation for 1PGY at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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