1PJ5 Oxidoreductase date Jun 01, 2003
title Crystal Structure Of Dimethylglycine Oxidase Of Arthrobacter Globiformis In Complex With Acetate
authors D.Leys, J.Basran, N.S.Scrutton
compound source
Molecule: N,N-Dimethylglycine Oxidase
Chain: A
Ec: 1.5.3.10
Engineered: Yes
 Organism_scientific: Arthrobacter Globiformis
Organism_taxid: 1665
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Puc19
symmetry Space Group: C 2 2 2
R_factor 0.160 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.381 226.680 120.661 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.61 Å
ligand ACT, FAD, NA enzyme Oxidoreductase E.C.1.5.3.10 BRENDA
related structures by homologous chain: 1PJ6
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceChannelling and formation of 'active' formaldehyde in dimethylglycine oxidase., Leys D, Basran J, Scrutton NS, EMBO J 2003 Aug 15;22(16):4038-48. PMID:12912903
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]
  • Biological Unit Coordinates (1pj5.pdb1.gz) 643 Kb
  • LPC: Ligand-Protein Contacts for 1PJ5
  • CSU: Contacts of Structural Units for 1PJ5
  • Likely Quarternary Molecular Structure file(s) for 1PJ5
  • Structure Factors (964 Kb)
  • Retrieve 1PJ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PJ5 from S2C, [Save to disk]
  • Re-refined 1pj5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PJ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PJ5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PJ5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pj5a3, region A:220-338 [Jmol] [rasmolscript] [script source]
        - Domain d1pj5a2, region A:4-219,A:339-427 [Jmol] [rasmolscript] [script source]
        - Domain d1pj5a4, region A:428-742 [Jmol] [rasmolscript] [script source]
        - Domain d1pj5a1, region A:743-830 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pj5_A] [1pj5]
  • SWISS-PROT database: [Q9AGP8]
  • Domain organization of [Q9AGP8_ARTGO] by SWISSPFAM
    • Other resources with information on 1PJ5
  • Community annotation for 1PJ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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