1PKG	Transferase Activator	date	Jun 05, 2003
title	Structure Of A C-Kit Kinase Product Complex
authors	C.D.Mol, K.B.Lim, V.Sridhar, H.Zou, E.Y.T.Chien, B.C.Sang, J.Nowa D.B.Kassel, C.N.Cronin, D.E.Mcree
compound		source
Molecule: C-Kit Protein Chain: A, B Fragment: Catalytic Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus Expression_system_vector: Psxb1 (Modified Version Of Pfastb (Invitrogen))
symmetry	Space Group: P 21 21 2	R_factor 0.225 R_Free 0.311
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.667 116.458 60.066 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	ADP, MG, PTR	enzyme
related structures	by homologous chain: 1T45
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of a c-kit product complex reveals the basis for kinase transactivation., Mol CD, Lim KB, Sridhar V, Zou H, Chien EY, Sang BC, Nowakowski J, Kassel DB, Cronin CN, McRee DE, J Biol Chem 2003 Aug 22;278(34):31461-4. Epub 2003 Jun 24. PMID:12824176

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk] Biological Unit Coordinates (1pkg.pdb1.gz) 48 Kb Biological Unit Coordinates (1pkg.pdb2.gz) 47 Kb Biological Unit Coordinates (1pkg.pdb3.gz) 182 Kb LPC: Ligand-Protein Contacts for 1PKG CSU: Contacts of Structural Units for 1PKG Likely Quarternary Molecular Structure file(s) for 1PKG Retrieve 1PKG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PKG from S2C, [Save to disk]

View 1PKG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PKG

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1PKG, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pkga_, region A [Jmol] [rasmolscript] [script source]     - Domain d1pkgb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pkg_B] [1pkg] [1pkg_A] SWISS-PROT database: [P10721] Domain organization of [KIT_HUMAN] by SWISSPFAM Domain found in 1PKG: [TyrKc ] by SMART

Other resources with information on 1PKG

Community annotation for 1PKG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---