1PKN Phosphotransferase date Mar 25, 1994
title Structure Of Rabbit Muscle Pyruvate Kinase Complexed With Mn And Pyruvate
authors T.M.Larsen, L.T.Laughlin, H.M.Holden, I.Rayment, G.H.Reed
compound source
Molecule: Pyruvate Kinase
Chain: A
Ec: 2.7.1.40
Engineered: Yes
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
symmetry Space Group: P 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.600 109.900 146.800 94.90 93.60 112.30
method X-Ray Diffractionresolution 2.90 Å
ligand K, MN, PYR enzyme Transferase E.C.2.7.1.40 BRENDA
related structures by homologous chain: 1F3W, 1LIX
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of rabbit muscle pyruvate kinase complexed with Mn2+, K+, and pyruvate., Larsen TM, Laughlin LT, Holden HM, Rayment I, Reed GH, Biochemistry 1994 May 24;33(20):6301-9. PMID:8193145
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (1pkn.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 1PKN
  • CSU: Contacts of Structural Units for 1PKN
  • Likely Quarternary Molecular Structure file(s) for 1PKN
  • Retrieve 1PKN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PKN from S2C, [Save to disk]
  • View 1PKN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PKN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PKN, from MSDmotif at EBI
  • Genome occurence of 1PKN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pkn_1, region 116-217 [Jmol] [rasmolscript] [script source]
        - Domain d1pkn_2, region 12-115,218-395 [Jmol] [rasmolscript] [script source]
        - Domain d1pkn_3, region 396-530 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pkn_A] [1pkn]
  • SWISS-PROT database: [P11974]
  • Domain organization of [KPYM_RABIT] by SWISSPFAM
  • Other resources with information on 1PKN
  • Community annotation for 1PKN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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