1PL4 Oxidoreductase date Jun 06, 2003
title Crystal Structure Of Human Mnsod Y166f Mutant
authors L.Fan, J.A.Tainer
compound source
Molecule: Superoxide Dismutase [Mn], Mitochondrial
Chain: A, B, C, D
Ec: 1.15.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organelle: Mitochondria
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Qc774
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrc99a
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.689 77.711 135.795 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.47 Å
ligand MN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1XIL
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceAmino-acid substitution at the dimeric interface of human manganese superoxide dismutase., Hearn AS, Fan L, Lepock JR, Luba JP, Greenleaf WB, Cabelli DE, Tainer JA, Nick HS, Silverman DN, J Biol Chem 2003 Nov 24;. PMID:14638684
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (1pl4.pdb1.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 1PL4
  • CSU: Contacts of Structural Units for 1PL4
  • Likely Quarternary Molecular Structure file(s) for 1PL4
  • Structure Factors (1075 Kb)
  • Retrieve 1PL4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PL4 from S2C, [Save to disk]
  • Re-refined 1pl4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PL4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PL4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1PL4 1PL4A 1PL4B 1PL4C 1PL4D from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PL4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pl4a1, region A:1-83 [Jmol] [rasmolscript] [script source]
        - Domain d1pl4a2, region A:84-198 [Jmol] [rasmolscript] [script source]
        - Domain d1pl4b1, region B:1-83 [Jmol] [rasmolscript] [script source]
        - Domain d1pl4b2, region B:84-196 [Jmol] [rasmolscript] [script source]
        - Domain d1pl4c1, region C:1-83 [Jmol] [rasmolscript] [script source]
        - Domain d1pl4c2, region C:84-197 [Jmol] [rasmolscript] [script source]
        - Domain d1pl4d1, region D:1-83 [Jmol] [rasmolscript] [script source]
        - Domain d1pl4d2, region D:84-197 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pl4_B] [1pl4_A] [1pl4_C] [1pl4_D] [1pl4]
  • SWISS-PROT database: [P04179]
  • Domain organization of [SODM_HUMAN] by SWISSPFAM
  • Other resources with information on 1PL4
  • Community annotation for 1PL4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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