1PM9	Oxidoreductase	date	Jun 10, 2003
title	Crystal Structure Of Human Mnsod H30n, Y166f Mutant
authors	L.Fan, J.A.Tainer
compound		source
Molecule: Superoxide Dismutase [Mn], Mitochondrial Chain: A, B Ec: 1.15.1.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sod2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
symmetry	Space Group: P 21 21 2	R_factor 0.215 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.580 76.460 66.610 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	MN3	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
related structures	by homologous chain: 1N0N, 1XIL
Gene Ontology	Chain Function Process Component A, B
Primary reference	Amino-acid substitution at the dimeric interface of human manganese superoxide dismutase., Hearn AS, Fan L, Lepock JR, Luba JP, Greenleaf WB, Cabelli DE, Tainer JA, Nick HS, Silverman DN, J Biol Chem 2003 Nov 24;. PMID:14638684

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk] Biological Unit Coordinates (1pm9.pdb1.gz) 128 Kb LPC: Ligand-Protein Contacts for 1PM9 CSU: Contacts of Structural Units for 1PM9 Likely Quarternary Molecular Structure file(s) for 1PM9 Structure Factors (545 Kb) Retrieve 1PM9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PM9 from S2C, [Save to disk] Re-refined 1pm9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1PM9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PM9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1PM9, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pm9a1, region A:1-83 [Jmol] [rasmolscript] [script source]     - Domain d1pm9a2, region A:84-196 [Jmol] [rasmolscript] [script source]     - Domain d1pm9b1, region B:1-83 [Jmol] [rasmolscript] [script source]     - Domain d1pm9b2, region B:84-198 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pm9] [1pm9_B] [1pm9_A] SWISS-PROT database: [P04179] Domain organization of [SODM_HUMAN] by SWISSPFAM

Other resources with information on 1PM9

Community annotation for 1PM9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---