1PMI Isomerase date Apr 03, 1996
title Candida Albicans Phosphomannose Isomerase
authors A.Cleasby, T.Skarzynski, A.Wonacott, G.J.Davies, R.E.Hubbard, A.E.I.Proudfoot, T.N.C.Wells, M.A.Payton, A.R.Bernard
compound source
Molecule: Phosphomannose Isomerase
Chain: A
Synonym: Pmi
Ec: 5.3.1.8
 Organism_scientific: Candida Albicans
Organism_taxid: 5476
symmetry Space Group: C 1 2 1
R_factor 0.184 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.830 52.920 85.730 90.00 127.54 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand ZN enzyme Isomerase E.C.5.3.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe x-ray crystal structure of phosphomannose isomerase from Candida albicans at 1.7 angstrom resolution., Cleasby A, Wonacott A, Skarzynski T, Hubbard RE, Davies GJ, Proudfoot AE, Bernard AR, Payton MA, Wells TN, Nat Struct Biol 1996 May;3(5):470-9. PMID:8612079
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (1pmi.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 1PMI
  • CSU: Contacts of Structural Units for 1PMI
  • Likely Quarternary Molecular Structure file(s) for 1PMI
  • Structure Factors (330 Kb)
  • Retrieve 1PMI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PMI from S2C, [Save to disk]
  • Re-refined 1pmi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PMI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PMI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PMI, from MSDmotif at EBI
  • Genome occurence of 1PMI's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pmi__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pmi] [1pmi_A]
  • SWISS-PROT database: [P34948]
  • Domain organization of [MPI_CANAL] by SWISSPFAM
    • Other resources with information on 1PMI
  • Community annotation for 1PMI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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