1PMS Signal Transduction date Feb 18, 1997
title Pleckstrin Homology Domain Of Son Of Sevenless 1 (Sos1) With Serine Added To The N-Terminus, Nmr, 20 Structures
authors S.Koshiba, T.Kigawa, J.Kim, M.Shirouzu, D.Bowtell, S.Yokoyama, Rik Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Sos 1
Chain: A
Fragment: Pleckstrin Homology Domain
Synonym: Son Of Sevenless
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pgex-4t3
methodSolution NMR
related structures by homologous chain: 1AWE, 1DBH
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of the pleckstrin homology domain of mouse Son-of-sevenless 1 (mSos1)., Koshiba S, Kigawa T, Kim JH, Shirouzu M, Bowtell D, Yokoyama S, J Mol Biol 1997 Jun 20;269(4):579-91. PMID:9217262
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (730 Kb) [Save to disk]
  • Biological Unit Coordinates (1pms.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1PMS
  • Original NMR restraints for 1PMS from PDB
  • Retrieve 1PMS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PMS from S2C, [Save to disk]
  • View 1PMS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PMS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PMS, from MSDmotif at EBI
  • Genome occurence of 1PMS's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pms__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pms_A] [1pms]
  • SWISS-PROT database: [Q62245]
  • Domain organization of [SOS1_MOUSE] by SWISSPFAM
  • Domain found in 1PMS: [PH ] by SMART
  • Other resources with information on 1PMS
  • Community annotation for 1PMS at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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