1PMY Electron Transfer(Cuproprotein) date Jan 28, 1994
title Refined Crystal Structure Of Pseudoazurin From Methylobacter Extorquens Am1 At 1.5 Angstroms Resolution
authors T.Inoue, Y.Kai, S.Harada, N.Kasai, Y.Ohshiro, S.Suzuki, T.Kohzuma,
compound source
Molecule: Pseudoazurin
Chain: A
Engineered: Yes
 Organism_scientific: Methylobacterium Extorquens
Organism_taxid: 408
symmetry Space Group: P 21 21 21
R_factor 0.199 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.619 63.280 35.133 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceRefined crystal structure of pseudoazurin from Methylobacterium extorquens AM1 at 1.5 A resolution., Inoue T, Kai Y, Harada S, Kasai N, Ohshiro Y, Suzuki S, Kohzuma T, Tobari J, Acta Crystallogr D Biol Crystallogr. 1994 May 1;50(Pt 3):317-28. PMID:15299445
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1pmy.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 1PMY
  • CSU: Contacts of Structural Units for 1PMY
  • Likely Quarternary Molecular Structure file(s) for 1PMY
  • Structure Factors (239 Kb)
  • Retrieve 1PMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PMY from S2C, [Save to disk]
  • Re-refined 1pmy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PMY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1PMY from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PMY, from MSDmotif at EBI
  • Genome occurence of 1PMY's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pmy__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pmy] [1pmy_A]
  • SWISS-PROT database: [P04171]
  • Domain organization of [AZUP_METEA] by SWISSPFAM
    • Other resources with information on 1PMY
  • Community annotation for 1PMY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1PMY from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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