1PN7 Rna Binding Protein Rna date Jun 12, 2003
title Coordinates Of S12, L11 Proteins And P-Trna, From The 70s X- Structure Aligned To The 70s Cryo-Em Map Of E.Coli Ribosome
authors M.Valle, A.Zavialov, J.Sengupta, U.Rawat, M.Ehrenberg, J.Frank
compound source
Molecule: P-Trna
Chain: C
Engineered: Yes
Synthetic: Yes

Molecule: 30s Ribosomal Protein S12
Chain: O

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 50s Ribosomal Protein L11
Chain: L

Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 10.80 Å
Gene
Ontology
ChainFunctionProcessComponent
L


O


Primary referenceLocking and unlocking of ribosomal motions., Valle M, Zavialov A, Sengupta J, Rawat U, Ehrenberg M, Frank J, Cell 2003 Jul 11;114(1):123-34. PMID:12859903
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9 Kb) [Save to disk]
  • Biological Unit Coordinates (1pn7.pdb1.gz) 6 Kb
  • CSU: Contacts of Structural Units for 1PN7
  • Likely Quarternary Molecular Structure file(s) for 1PN7
  • Retrieve 1PN7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PN7 from S2C, [Save to disk]
  • View 1PN7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PN7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PN7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pn7c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1pn7l_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1pn7o_, region O [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pn7_O] [1pn7] [1pn7_L] [1pn7_C]
  • SWISS-PROT database: [P29395] [Q5SHN3]
  • Domain organization of [RL11_THEMA] [RS12_THET8] by SWISSPFAM
  • Domain found in 1PN7: [RL11 ] by SMART
  • Other resources with information on 1PN7
  • Community annotation for 1PN7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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