1PNG Hydrolase date Jun 02, 1994
title Crystal Structure Of Peptide-N(4)-(N-Acetyl-Beta-D-Glucosami Asparagine Amidase At 2.2 Angstroms Resolution
authors P.Van Roey, P.Kuhn
compound source
Molecule: Peptide-N(4)-(N-Acetyl-Beta-D-Glucosaminyl)Aspara Amidase F;
Chain: A
Ec: 3.5.1.52
Engineered: Yes
Organism_scientific: Elizabethkingia Meningoseptica
Organism_taxid: 238
symmetry Space Group: C 2 2 21
R_factor 0.183 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.160 125.100 79.330 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Hydrolase E.C.3.5.1.52 BRENDA
related structures by homologous chain: 1PNF
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of peptide-N4-(N-acetyl-beta-D-glucosaminyl)asparagine amidase F at 2.2-A resolution., Kuhn P, Tarentino AL, Plummer TH Jr, Van Roey P, Biochemistry 1994 Oct 4;33(39):11699-706. PMID:7918386
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1png.pdb1.gz) 54 Kb
  • CSU: Contacts of Structural Units for 1PNG
  • Likely Quarternary Molecular Structure file(s) for 1PNG
  • Retrieve 1PNG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PNG from S2C, [Save to disk]
  • View 1PNG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PNG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PNG, from MSDmotif at EBI
  • Genome occurence of 1PNG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1png_2, region 141-314 [Jmol] [rasmolscript] [script source]
        - Domain d1png_1, region 5-140 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1png] [1png_A]
  • SWISS-PROT database: [P21163]
  • Domain organization of [PNGF_ELIMR] by SWISSPFAM
  • Other resources with information on 1PNG
  • Community annotation for 1PNG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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