1POV ROLE AND MECHANISM OF THE MATURATION CLEAVAGE OF VP0 IN POLIOVIRUS ASSEMBLY: STRUCTURE OF THE EMPTY CAPSID ASSEMBLY INTERMEDIATE AT 2.9 ANGSTROMS RESOLUTION date
authors Basavappa, R., Filman, D.J., Hogle, J.M.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand MYR, SPH enzyme
related structures by homologous chain: 1EAH, 2PLV
Gene
Ontology
ChainFunctionProcessComponent
0


1, 3


Primary referenceRole and mechanism of the maturation cleavage of VP0 in poliovirus assembly: structure of the empty capsid assembly intermediate at 2.9 A resolution., Basavappa R, Syed R, Flore O, Icenogle JP, Filman DJ, Hogle JM, Protein Sci 1994 Oct;3(10):1651-69. PMID:7849583
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (1pov.pdb1.gz) 7342 Kb
  • LPC: Ligand-Protein Contacts for 1POV
  • CSU: Contacts of Structural Units for 1POV
  • Likely Quarternary Molecular Structure file(s) for 1POV
  • Retrieve 1POV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1POV from S2C, [Save to disk]
  • View 1POV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1POV
  • VIPERdb: visual, structural and computational analysis of 1POV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1POV, from MSDmotif at EBI
  • Genome occurence of 1POV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pov0_, region 0 [Jmol] [rasmolscript] [script source]
        - Domain d1pov1_, region 1 [Jmol] [rasmolscript] [script source]
        - Domain d1pov3_, region 3 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pov] [1pov_3] [1pov_1] [1pov_0]
  • SWISS-PROT database: [P03300]
  • Domain organization of [POLG_POL1M] by SWISSPFAM
  • Other resources with information on 1POV
  • Community annotation for 1POV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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