1PPN Hydrolase(Sulfhydryl Proteinase) date Oct 25, 1991
title Structure Of Monoclinic Papain At 1.60 Angstroms Resolution
authors R.W.Pickersgill, G.W.Harris, E.Garman
compound source
Molecule: Papain
Chain: A
Engineered: Yes
 Organism_scientific: Carica Papaya
Organism_common: Papaya
Organism_taxid: 3649
symmetry Space Group: P 1 21 1
R_factor 0.160 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.700 50.700 31.500 90.00 98.40 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand MOH, UNL enzyme
related structures by homologous chain: 1KHQ, 9PAP
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1ppn.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1PPN
  • CSU: Contacts of Structural Units for 1PPN
  • Likely Quarternary Molecular Structure file(s) for 1PPN
  • Structure Factors (185 Kb)
  • Retrieve 1PPN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PPN from S2C, [Save to disk]
  • Re-refined 1ppn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PPN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PPN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PPN, from MSDmotif at EBI
  • Genome occurence of 1PPN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ppn__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ppn_A] [1ppn]
  • SWISS-PROT database: [P00784]
  • Domain organization of [PAPA1_CARPA] by SWISSPFAM
  • Domain found in 1PPN: [Pept_C1 ] by SMART
    • Other resources with information on 1PPN
  • Community annotation for 1PPN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science