1PPR Light-Harvesting Protein date Mar 06, 1996
title Peridinin-Chlorophyll-Protein Of Amphidinium Carterae
authors E.Hofmann, W.Welte, K.Diederichs
compound source
Molecule: Peridinin-Chlorophyll Protein
Chain: M, N, O
Synonym: Pcp
 Organism_scientific: Amphidinium Carterae
Organism_taxid: 2961
Strain: Cs-21
symmetry Space Group: C 1 2 1
R_factor 0.179 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
198.426 116.296 67.025 90.00 94.89 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CLA, DGD, PID enzyme
Gene
Ontology
ChainFunctionProcessComponent
O, M, N


Primary referenceStructural basis of light harvesting by carotenoids: peridinin-chlorophyll-protein from Amphidinium carterae., Hofmann E, Wrench PM, Sharples FP, Hiller RG, Welte W, Diederichs K, Science 1996 Jun 21;272(5269):1788-91. PMID:8650577
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (1ppr.pdb1.gz) 181 Kb
  • LPC: Ligand-Protein Contacts for 1PPR
  • CSU: Contacts of Structural Units for 1PPR
  • Likely Quarternary Molecular Structure file(s) for 1PPR
  • Structure Factors (866 Kb)
  • Retrieve 1PPR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PPR from S2C, [Save to disk]
  • Re-refined 1ppr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PPR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PPR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PPR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pprm1, region M:1-156 [Jmol] [rasmolscript] [script source]
        - Domain d1pprm2, region M:157-312 [Jmol] [rasmolscript] [script source]
        - Domain d1pprn1, region N:1-156 [Jmol] [rasmolscript] [script source]
        - Domain d1pprn2, region N:157-312 [Jmol] [rasmolscript] [script source]
        - Domain d1ppro1, region O:1-156 [Jmol] [rasmolscript] [script source]
        - Domain d1ppro2, region O:157-312 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ppr_N] [1ppr_O] [1ppr_M] [1ppr]
  • SWISS-PROT database: [P80484]
  • Domain organization of [PCP1_AMPCA] by SWISSPFAM
    • Other resources with information on 1PPR
  • Community annotation for 1PPR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science