1PVI Hydrolase Dna date Nov 16, 1994
title Structure Of Pvuii Endonuclease With Cognate Dna
authors X.Cheng, K.Balendiran, I.Schildkraut, J.E.Anderson
compound source
Molecule: Dna (5'-D(Tpgpapcpcpapgpcptpgpgptpc)
Chain: C, D
Engineered: Yes
Synthetic: Yes

Molecule: Protein (Pvuii (E.C.3.1.21.4))
Chain: A, B

Organism_scientific: Proteus Vulgaris
Organism_taxid: 585
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.800 86.300 48.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand
enzyme Hydrolase E.C.3.1.21.4 BRENDA
related structures by homologous chain: 1H56, 1NI0
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity


  • Primary referenceStructure of PvuII endonuclease with cognate DNA., Cheng X, Balendiran K, Schildkraut I, Anderson JE, EMBO J 1994 Sep 1;13(17):3927-35. PMID:8076590
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (1pvi.pdb1.gz) 63 Kb
  • CSU: Contacts of Structural Units for 1PVI
  • Likely Quarternary Molecular Structure file(s) for 1PVI
  • Retrieve 1PVI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PVI from S2C, [Save to disk]
  • View 1PVI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PVI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PVI, from MSDmotif at EBI
  • Genome occurence of 1PVI's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pvia_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1pvib_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pvi_A] [1pvi_B] [1pvi_C] [1pvi_D] [1pvi]
  • SWISS-PROT database: [P23657]
  • Domain organization of [T2P2_PROVU] by SWISSPFAM
  • Other resources with information on 1PVI
  • Community annotation for 1PVI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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