1PWH Lyase date Jul 01, 2003
title Rat Liver L-Serine Dehydratase- Complex With Pyridoxyl-(O-Me Serine)-5-Monophosphate
authors T.Yamada, J.Komoto, Y.Takata, H.Ogawa, F.Takusagawa
compound source
Molecule: L-Serine Dehydratase
Chain: A, B, C, D
Ec: 4.3.1.17
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_plasmid: Pcwori+
symmetry Space Group: P 1 21 1
R_factor 0.230 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.241 109.262 98.940 90.00 91.66 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand K, PLV enzyme Lyase E.C.4.3.1.17 BRENDA
related structures by homologous chain: 1P5J, 1PWE
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of serine dehydratase from rat liver., Yamada T, Komoto J, Takata Y, Ogawa H, Pitot HC, Takusagawa F, Biochemistry 2003 Nov 11;42(44):12854-65. PMID:14596599
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (1pwh.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (1pwh.pdb2.gz) 52 Kb
  • Biological Unit Coordinates (1pwh.pdb3.gz) 51 Kb
  • Biological Unit Coordinates (1pwh.pdb4.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1PWH
  • CSU: Contacts of Structural Units for 1PWH
  • Likely Quarternary Molecular Structure file(s) for 1PWH
  • Retrieve 1PWH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PWH from S2C, [Save to disk]
    • View 1PWH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PWH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PWH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pwha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1pwhb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1pwhc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1pwhd_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pwh_D] [1pwh] [1pwh_C] [1pwh_B] [1pwh_A]
  • SWISS-PROT database: [P09367]
  • Domain organization of [SDHL_RAT] by SWISSPFAM
    • Other resources with information on 1PWH
  • Community annotation for 1PWH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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