1PXH Hydrolase date Jul 04, 2003
title Crystal Structure Of Protein Tyrosine Phosphatase 1b With Po Selective Bidentate Inhibitor Compound 2
authors J.P.Sun, A.Fedorov, S.Y.Lee, X.L.Guo, K.Shen, D.S.Lawrence, S.C.Al Z.Y.Zhang
compound source
Molecule: Protein-Tyrosine Phosphatase, Non-Receptor Type 1
Chain: A
Fragment: Residues 1-321
Synonym: Protein-Tyrosine Phosphatase 1b, Ptp-1b
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptp1b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Puc118
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.840 85.678 88.678 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand ACY, MG, SNA enzyme Hydrolase E.C.3.1.3.48 BRENDA
note 1PXH supersedes 1N6W
related structures by homologous chain: 1OEV, 1ONY
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of PTP1B complexed with a potent and selective bidentate inhibitor., Sun JP, Fedorov AA, Lee SY, Guo XL, Shen K, Lawrence DS, Almo SC, Zhang ZY, J Biol Chem 2003 Apr 4;278(14):12406-14. PMID:12547827
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1pxh.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1PXH
  • CSU: Contacts of Structural Units for 1PXH
  • Likely Quarternary Molecular Structure file(s) for 1PXH
  • Retrieve 1PXH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PXH from S2C, [Save to disk]
  • View 1PXH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PXH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PXH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pxha_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pxh] [1pxh_A]
  • SWISS-PROT database: [P18031]
  • Domain organization of [PTN1_HUMAN] by SWISSPFAM
  • Domains found in 1PXH: [PTPc] [PTPc_DSPc ] by SMART
  • Other resources with information on 1PXH
  • Community annotation for 1PXH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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