1PYV Hydrolase date Jul 09, 2003
title Nmr Solution Structure Of The Mitochondrial F1b Presequence From Nicotiana Plumbaginifolia
authors P.Moberg, S.Nilsson, A.Stahl, A.C.Eriksson, E.Glaser, L.Maler
compound source
Molecule: Atp Synthase Beta Chain, Mitochondrial Precursor
Chain: A
Synonym: F1b Presequence Peptide
Ec: 3.6.3.14
Engineered: Yes
Organism_scientific: Nicotiana Plumbaginifolia
Organism_common: Curled-Leaved Tobacco
Organism_taxid: 4092
Gene: Atpb Or Atp2-1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.6.3.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR solution structure of the mitochondrial F1beta presequence from Nicotiana plumbaginifolia., Moberg P, Nilsson S, Stahl A, Eriksson AC, Glaser E, Maler L, J Mol Biol 2004 Mar 5;336(5):1129-40. PMID:15037074
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (326 Kb) [Save to disk]
  • Biological Unit Coordinates (1pyv.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1PYV
  • Original NMR restraints for 1PYV from PDB
  • Retrieve 1PYV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PYV from S2C, [Save to disk]
  • View 1PYV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PYV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PYV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pyva_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pyv] [1pyv_A]
  • SWISS-PROT database: [P17614]
  • Domain organization of [ATPBM_NICPL] by SWISSPFAM
  • Other resources with information on 1PYV
  • Community annotation for 1PYV at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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