1PZ4 Lipid Binding Protein date Jul 09, 2003
title The Structural Determination Of An Insect (Mosquito) Sterol Protein-2 With A Ligand Bound C16 Fatty Acid At 1.35 A Reso
authors D.H.Dyer, S.Lovell, J.B.Thoden, H.M.Holden, I.Rayment, Q.Lan
compound source
Molecule: Sterol Carrier Protein 2
Chain: A
Engineered: Yes
 Organism_scientific: Aedes Aegypti
Organism_common: Yellow Fever Mosquito
Organism_taxid: 7159
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Pgex-4t-2 Gst
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.300 46.100 70.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand PLM enzyme
note 1PZ4 is a representative structure
Primary referenceThe structural determination of an insect sterol carrier protein-2 with a ligand-bound C16 fatty acid at 1.35-A resolution., Dyer DH, Lovell S, Thoden JB, Holden HM, Rayment I, Lan Q, J Biol Chem 2003 Oct 3;278(40):39085-91. Epub 2003 Jul 10. PMID:12855689
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (1pz4.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1PZ4
  • CSU: Contacts of Structural Units for 1PZ4
  • Likely Quarternary Molecular Structure file(s) for 1PZ4
  • Structure Factors (201 Kb)
  • Retrieve 1PZ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PZ4 from S2C, [Save to disk]
  • Re-refined 1pz4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PZ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PZ4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1PZ4 from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PZ4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pz4a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pz4_A] [1pz4]
  • SWISS-PROT database: [Q86PR3]
  • Domain organization of [Q86PR3_AEDAE] by SWISSPFAM
    • Other resources with information on 1PZ4
  • Community annotation for 1PZ4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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