1PZW Transcription date Jul 14, 2003
title Crystal Structure Of The Zinc Finger Associated Domain Of Th Drosophila Transcription Factor Grauzone
authors R.Jauch, G.P.Bourenkov, H.R.Chung, H.Urlaub, U.Reidt, H.Jaeckle,
compound source
Molecule: Transcription Factor Grauzone
Chain: A
Fragment: Zinc Finger Associated Domain (Zad)
Synonym: Zinc Finger Associated Domain Of Drosophila Grauzo Grauzone Cg33133-Pa;
Engineered: Yes
Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: Grauzone
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex
symmetry Space Group: P 41 21 2
R_factor 0.241 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.660 48.660 82.123 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe zinc finger-associated domain of the Drosophila transcription factor grauzone is a novel zinc-coordinating protein-protein interaction module., Jauch R, Bourenkov GP, Chung HR, Urlaub H, Reidt U, Jackle H, Wahl MC, Structure (Camb) 2003 Nov;11(11):1393-402. PMID:14604529
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (1pzw.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 1PZW
  • CSU: Contacts of Structural Units for 1PZW
  • Likely Quarternary Molecular Structure file(s) for 1PZW
  • Structure Factors (44 Kb)
  • Retrieve 1PZW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PZW from S2C, [Save to disk]
  • Re-refined 1pzw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PZW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PZW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PZW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pzwa_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pzw] [1pzw_A]
  • SWISS-PROT database: [Q9U405]
  • Domain organization of [GRAU_DROME] by SWISSPFAM
  • Domain found in 1PZW: [zf-AD ] by SMART
  • Other resources with information on 1PZW
  • Community annotation for 1PZW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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