1Q04 Hormone Growth Factor date Jul 15, 2003
title Crystal Structure Of Fgf-1, S50ev51n
authors J.Kim, M.Blaber
compound source
Molecule: Heparin-Binding Growth Factor 1
Chain: A, B
Synonym: Acidic Fibroblast Growth Factor; Fgf-1; Hbgf-1; Af Endothelial Cell Growth Factor; Ecgf-Beta; Fibroblast Growt 1;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: C 2 2 21
R_factor 0.185 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.400 96.300 109.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand FMT enzyme
related structures by homologous chain: 1JT4, 1JT5
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSequence swapping does not result in conformation swapping for the beta4/beta5 and beta8/beta9 beta-hairpin turns in human acidic fibroblast growth factor., Kim J, Lee J, Brych SR, Logan TM, Blaber M, Protein Sci 2005 Feb;14(2):351-9. Epub 2005 Jan 4. PMID:15632285
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1q04.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (1q04.pdb2.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 1Q04
  • CSU: Contacts of Structural Units for 1Q04
  • Likely Quarternary Molecular Structure file(s) for 1Q04
  • Structure Factors (315 Kb)
  • Retrieve 1Q04 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q04 from S2C, [Save to disk]
  • Re-refined 1q04 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1Q04 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Q04
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Q04, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q04a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1q04b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q04_A] [1q04] [1q04_B]
  • SWISS-PROT database: [P05230]
  • Domain organization of [FGF1_HUMAN] by SWISSPFAM
  • Domain found in 1Q04: [FGF ] by SMART
    • Other resources with information on 1Q04
  • Community annotation for 1Q04 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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