1Q0F	Oxidoreductase	date	Jul 16, 2003
title	Crystal Structure Of Ni-Containing Superoxide Dismutase With Ligation Corresponding To The State After Partial X-Ray-Ind Reduction
authors	J.Wuerges, J.W.Lee, Y.I.Yim, H.S.Yim, S.O.Kang, K.Djinovic Ca
compound		source
Molecule: Superoxide Dismutase [Ni] Chain: A, B, C, D, E, F, G, H, I, J, K, L Synonym: Nickel-Containing Superoxide Dismutase; Nisod; Ni- Superoxide Dismutase; Ec: 1.15.1.1 Other_details: The Asymmetric Unit Contains Two Hexamers		Organism_scientific: Streptomyces Seoulensis Organism_taxid: 73044
symmetry	Space Group: P 21 21 21	R_factor 0.157 R_Free 0.167
crystal cell	length a length b length c angle alpha angle beta angle gamma 112.260 113.749 128.618 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	3NI, SO4	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
related structures	by homologous chain: 1Q0D, 1Q0K
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L
Primary reference	Crystal structure of nickel-containing superoxide dismutase reveals another type of active site., Wuerges J, Lee JW, Yim YI, Yim HS, Kang SO, Carugo KD, Proc Natl Acad Sci U S A 2004 Jun 8;101(23):8569-74. Epub 2004 Jun 1. PMID:15173586

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk] Biological Unit Coordinates (1q0f.pdb1.gz) 126 Kb Biological Unit Coordinates (1q0f.pdb2.gz) 127 Kb LPC: Ligand-Protein Contacts for 1Q0F CSU: Contacts of Structural Units for 1Q0F Likely Quarternary Molecular Structure file(s) for 1Q0F Structure Factors (1280 Kb) Retrieve 1Q0F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Q0F from S2C, [Save to disk] Re-refined 1q0f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Q0F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Q0F

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Q0F, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1q0fa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1q0fb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1q0fc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1q0fd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1q0fe_, region E [Jmol] [rasmolscript] [script source]     - Domain d1q0ff_, region F [Jmol] [rasmolscript] [script source]     - Domain d1q0fg_, region G [Jmol] [rasmolscript] [script source]     - Domain d1q0fh_, region H [Jmol] [rasmolscript] [script source]     - Domain d1q0fi_, region I [Jmol] [rasmolscript] [script source]     - Domain d1q0fj_, region J [Jmol] [rasmolscript] [script source]     - Domain d1q0fk_, region K [Jmol] [rasmolscript] [script source]     - Domain d1q0fl_, region L [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1q0f_B] [1q0f_L] [1q0f_I] [1q0f_K] [1q0f_H] [1q0f_F] [1q0f_J] [1q0f_E] [1q0f_A] [1q0f_C] [1q0f_G] [1q0f] [1q0f_D] SWISS-PROT database: [P80734] Domain organization of [SODN_STRSO] by SWISSPFAM

Other resources with information on 1Q0F

Community annotation for 1Q0F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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