1Q0V Solution Structure of Tandem UIMs of Vps27 date
authors Swanson, K.A., Kang, R.S., Stamenova, S.D., Hicke, L., Radhakrishnan, I.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
Primary referenceSolution structure of Vps27 UIM-ubiquitin complex important for endosomal sorting and receptor downregulation., Swanson KA, Kang RS, Stamenova SD, Hicke L, Radhakrishnan I, EMBO J 2003 Sep 15;22(18):4597-606. PMID:12970172
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (422 Kb) [Save to disk]
  • Biological Unit Coordinates (1q0v.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1Q0V
  • Original NMR restraints for 1Q0V from PDB
  • Retrieve 1Q0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q0V from S2C, [Save to disk]
    • View 1Q0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Q0V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Q0V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q0va_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q0v_A] [1q0v]
  • SWISS-PROT database: [P40343]
  • Domain organization of [VPS27_YEAST] by SWISSPFAM
  • Domain found in 1Q0V: [UIM ] by SMART
    • Other resources with information on 1Q0V
  • Community annotation for 1Q0V at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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