1Q7J Blood Clotting, Hydrolase date Aug 19, 2003
title Structural Analysis Of Integrin Alpha Iib Beta 3- Disintegri Akgdwn Motif
authors W.J.Chuang, C.Y.Chen, J.H.Shiu, Y.C.Chen
compound source
Molecule: Hemorrhagic Protein-Rhodostomin
Chain: A
Fragment: Disintegrin Rhodostomin
Synonym: Disintegrin Kistrin, Platelet Aggregation Activati Inhibitor;
Ec: 3.4.24.-
Engineered: Yes
Mutation: Yes
 Organism_scientific: Calloselasma Rhodostoma
Organism_common: Malayan Pit Viper
Organism_taxid: 8717
Gene: Rhod
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X-33
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppiczalphaa
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.4.24 BRENDA
related structures by homologous chain: 1FVL, 1Q7I
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (324 Kb) [Save to disk]
  • Biological Unit Coordinates (1q7j.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 1Q7J
  • Original NMR restraints for 1Q7J from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1Q7J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q7J from S2C, [Save to disk]
    • View 1Q7J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Q7J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Q7J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q7ja_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q7j] [1q7j_A]
  • SWISS-PROT database: [P30403]
  • Domain organization of [DISR_AGKRH] by SWISSPFAM
  • Domain found in 1Q7J: [DISIN ] by SMART
    • Other resources with information on 1Q7J
  • Community annotation for 1Q7J at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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