1Q9B Allergen date Aug 22, 2003
title Crystal Structure Analysis Of Hev B 6.02 (Hevein) At 1.5 Ang Resolution
authors A.Rodriguez-Romero, A.Hernandez-Santoyo
compound source
Molecule: Hevein
Chain: A
Synonym: Hev B 6.02
 Organism_scientific: Hevea Brasiliensis
Organism_taxid: 3981
Tissue: Latex
symmetry Space Group: P 21 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.810 60.950 22.510 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand MPD enzyme
note 1Q9B is a representative structure
related structures by homologous chain: 9WGA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInsights into a conformational epitope of Hev b 6.02 (hevein)., Reyes-Lopez CA, Hernandez-Santoyo A, Pedraza-Escalona M, Mendoza G, Hernandez-Arana A, Rodriguez-Romero A, Biochem Biophys Res Commun 2004 Jan 30;314(1):123-30. PMID:14715255
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1q9b.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 1Q9B
  • CSU: Contacts of Structural Units for 1Q9B
  • Likely Quarternary Molecular Structure file(s) for 1Q9B
  • Structure Factors (54 Kb)
  • Retrieve 1Q9B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q9B from S2C, [Save to disk]
  • Re-refined 1q9b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1Q9B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Q9B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1Q9B from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Q9B, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q9ba_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q9b] [1q9b_A]
  • SWISS-PROT database: [P02877]
  • Domain organization of [HEVE_HEVBR] by SWISSPFAM
  • Domain found in 1Q9B: [ChtBD1 ] by SMART
    • Other resources with information on 1Q9B
  • Community annotation for 1Q9B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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