1Q9J Ligase date Aug 25, 2003
title Structure Of Polyketide Synthase Associated Protein 5 From Mycobacterium Tuberculosis
authors J.Buglino, K.C.Onwueme, L.E.Quadri, C.D.Lima, S.K.Burley, New Yor Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Polyketide Synthase Associated Protein 5
Chain: A, B
Synonym: Papa5; Probable Papa5 Protein
Engineered: Yes
 Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Papa5
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Pet T7
Expression_system_plasmid: Psmt3 (Modified Pet28b)
symmetry Space Group: P 31 2 1
R_factor 0.236 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
172.982 172.982 80.535 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of PapA5, a phthiocerol dimycocerosyl transferase from Mycobacterium tuberculosis., Buglino J, Onwueme KC, Ferreras JA, Quadri LE, Lima CD, J Biol Chem 2004 Jul 16;279(29):30634-42. Epub 2004 May 3. PMID:15123643
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (1q9j.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (1q9j.pdb2.gz) 65 Kb
  • Biological Unit Coordinates (1q9j.pdb3.gz) 127 Kb
  • CSU: Contacts of Structural Units for 1Q9J
  • Likely Quarternary Molecular Structure file(s) for 1Q9J
  • Structure Factors (288 Kb)
  • Retrieve 1Q9J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q9J from S2C, [Save to disk]
  • Re-refined 1q9j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1Q9J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Q9J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Q9J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q9ja1, region A:1-175 [Jmol] [rasmolscript] [script source]
        - Domain d1q9ja2, region A:181-418 [Jmol] [rasmolscript] [script source]
        - Domain d1q9jb2, region B:181-418 [Jmol] [rasmolscript] [script source]
        - Domain d1q9jb1, region B:3-175 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q9j_A] [1q9j] [1q9j_B]
  • SWISS-PROT database: [P96208]
  • Domain organization of [PAPA5_MYCTU] by SWISSPFAM
    • Other resources with information on 1Q9J
  • Community annotation for 1Q9J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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