1QA6 Ribosome date Apr 15, 1999
title Crystal Structure Of A Conserved Ribosomal Protein-Rna Compl
authors G.L.Conn, D.E.Draper, E.E.Lattman, A.G.Gittis
compound source
Molecule: 58 Nucleotide Ribosomal Rna Domain
Chain: C, D
Fragment: Nts 1051-1108 From E. Coli 23s Rrna
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Other_details: Rna Synthesized By In Vitro Transcription Us Rna Polymerase;

Molecule: Ribosomal Protein L11
Chain: A, B
Fragment: C-Terminal Domain Of Ribosomal Protein L11
Engineered: Yes

Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11
symmetry Space Group: P 43 21 2
R_factor 0.240 R_Free 0.321
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.675 150.675 63.841 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MG, OS enzyme
related structures by homologous chain: 1OLN, 1Y39
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a conserved ribosomal protein-RNA complex., Conn GL, Draper DE, Lattman EE, Gittis AG, Science 1999 May 14;284(5417):1171-4. PMID:10325228
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1qa6.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (1qa6.pdb2.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 1QA6
  • CSU: Contacts of Structural Units for 1QA6
  • Likely Quarternary Molecular Structure file(s) for 1QA6
  • Retrieve 1QA6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QA6 from S2C, [Save to disk]
  • View 1QA6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QA6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QA6, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qa6a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qa6b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qa6_A] [1qa6_C] [1qa6_B] [1qa6] [1qa6_D]
  • SWISS-PROT database: [P56210]
  • Domain organization of [RL11_BACST] by SWISSPFAM
  • Domain found in 1QA6: [RL11 ] by SMART
  • Other resources with information on 1QA6
  • Community annotation for 1QA6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1QA6 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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