1QAN Transferase date Mar 26, 1999
title The Structure Of The Rrna Methyltransferase Ermc': Implicati The Reaction Mechanism
authors G.Schluckebier, P.Zhong, K.D.Stewart, T.J.Kavanaugh, C.Abad-Zapa
compound source
Molecule: Ermc' Methyltransferase
Chain: A
Synonym: Rrna Adenine N-6-Methyltransferase
Ec: 2.1.1.48
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.228 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.210 81.210 122.110 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ACT, SAH enzyme Transferase E.C.2.1.1.48 BRENDA
related structures by homologous chain: 1QAM, 1QAO
Gene
Ontology
ChainFunctionProcessComponent
A
  • rRNA (adenine-N6,N6-)-dimeth...
  • 23S rRNA (adenine(2085)-N(6)...


  • Primary referenceThe 2.2 A structure of the rRNA methyltransferase ErmC' and its complexes with cofactor and cofactor analogs: implications for the reaction mechanism., Schluckebier G, Zhong P, Stewart KD, Kavanaugh TJ, Abad-Zapatero C, J Mol Biol 1999 Jun 4;289(2):277-91. PMID:10366505
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1qan.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 1QAN
  • CSU: Contacts of Structural Units for 1QAN
  • Likely Quarternary Molecular Structure file(s) for 1QAN
  • Retrieve 1QAN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QAN from S2C, [Save to disk]
  • View 1QAN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QAN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QAN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qana_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qan_A] [1qan]
  • SWISS-PROT database: [P13956]
  • Domain organization of [ERM_BACSU] by SWISSPFAM
  • Domain found in 1QAN: [rADc ] by SMART
  • Other resources with information on 1QAN
  • Community annotation for 1QAN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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